Molecular Biology Weingarten-Gabbay S, Elias-Kirma S, Nir R, Gritsenko AA, Stern-Ginossar N, Yakhini Z, Weinberger A, Segal E. Comparative genetics. Systematic discovery of cap-independent translation sequences in human and viral genomes. Science. 2016 Jan 15;351(6270). pii: aad4939. doi: 10.1126/science.aad4939. Epub 2016 Jan 14. PubMed PMID: 26816383. Bernecky C, Herzog F, Baumeister W, Plitzko JM, Cramer […]
Development Eom DS, Bain EJ, Patterson LB, Grout ME, Parichy DM. Long-distance communication by specialized cellular projections during pigment pattern development and evolution. Elife. 2015 Dec 23;4. pii: e12401. doi: 10.7554/eLife.12401. [Epub ahead of print] PubMed PMID: 26701906. Stem cells Shirai H, Mandai M, Matsushita K, Kuwahara A, Yonemura S, Nakano T, Assawachananont J, Kimura […]
Genome Editing Bolukbasi MF, Gupta A, Oikemus S, Derr AG, Garber M, Brodsky MH, Zhu LJ, Wolfe SA. DNA-binding-domain fusions enhance the targeting range and precision of Cas9. Nat Methods. 2015 Oct 19. doi: 10.1038/nmeth.3624. [Epub ahead of print] PubMed PMID: 26480473. Thakore PI, D’Ippolito AM, Song L, Safi A, Shivakumar NK, Kabadi AM, Reddy […]
Monday, November 23, 2015
Genome editing Knight SC, Xie L, Deng W, Guglielmi B, Witkowsky LB, Bosanac L, Zhang ET, El Beheiry M, Masson JB, Dahan M, Liu Z, Doudna JA, Tjian R. Dynamics of CRISPR-Cas9 genome interrogation in living cells. Science. 2015 Nov 13;350(6262):823-6. doi: 10.1126/science.aac6572. PubMed PMID: 26564855. Kiani S, Chavez A, Tuttle M, Hall RN, Chari […]
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Also tagged cornea, CRISPR-CAS, diseases, drug discovery, ebola, Genome editing, genome sequencing, genomics, mutations, photoreceptor, research career, retina, retinal development, statistics, stem cells, zebrafish
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Population Genetics Balaresque P, Poulet N, Cussat-Blanc S, Gerard P, Quintana-Murci L, Heyer E, Jobling MA. Y-chromosome descent clusters and male differential reproductive success: young lineage expansions dominate Asian pastoral nomadic populations. Eur J Hum Genet. 2015 Jan 14. doi: 10.1038/ejhg.2014.285. [Epub ahead of print] PubMed PMID: 25585703. Nature News: Genghis Khan’s genetic legacy has […]
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Also tagged 3d printing, evolution, funding, genetics, Genome editing, genomics, imaging, medicine, neuroscience, population genetics, prosthetics, research career, retinal development
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Saturday, January 31, 2015
Cancer Tomasetti C, Vogelstein B. Cancer etiology. Variation in cancer risk among tissues can be explained by the number of stem cell divisions. Science. 2015 Jan 2;347(6217):78-81. doi: 10.1126/science.1260825. PubMed PMID: 25554788. Commentary: Wodarz D, Zauber AG. Cancer: Risk factors and random chances. Nature. 2015 Jan 29;517(7536):563-4. doi: 10.1038/517563a. PubMed PMID: 25631443. Commentary: Couzin-Frankel J. […]
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Also tagged brown-up brains, cancer, CRISPR, CRISPR-CAS, genetics, Genome editing, genotype-phenotype, imaging, mathematical modeling, morpholino, pattern, zebrafish
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Gene regulatory network Barsi JC, Tu Q, Davidson E. General approach for in vivo recovery of cell type specific effector gene sets. Genome Res. 2014 Mar 6. [Epub ahead of print] PubMed PMID: 24604781. Medicine Project to Improve Poor Children’s Intellect Led to Better Health, Data Show Begley CG, Ellis LM. Drug development: Raise standards […]
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Also tagged CRISPR, CRISPR-CAS, gene regulatory network, genetics, Genome editing, medicine, neuroscience, regenerative medicine, retina, retinal degeneration, retinal development, retinal regeneration, stem cells, synthetic biology, TALEN
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Thursday, February 27, 2014
Genome editing Kim JM, Kim D, Kim S, Kim JS. Genotyping with CRISPR-Cas-derived RNA-guided endonucleases. Nat Commun. 2014 Jan 20;5:3157. doi: 10.1038/ncomms4157. PubMed PMID: 24445736. Bae S, Park J, Kim JS. Cas-OFFinder: A fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases. Bioinformatics. 2014 Jan 24. [Epub ahead of print] […]
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Also tagged clock and wavefront, CRISPR, CRISPR-CAS, Genome editing, genomics, pigmentation, retinal degeneration, retinal regeneration, somitogenesis, STAP cells, TALEN, zebrafish
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Saturday, December 28, 2013
Neuroscience Widmann A, Schröger E. Filter effects and filter artifacts in the analysis of electrophysiological data. Front Psychol. 2012 Jul 9;3:233. doi: 10.3389/fpsyg.2012.00233. eCollection 2012. PubMed PMID: 22787453; PubMed Central PMCID: PMC3391960. Hsiao EY, McBride SW, Hsien S, Sharon G, Hyde ER, McCue T, Codelli JA, Chow J, Reisman SE, Petrosino JF, Patterson PH, Mazmanian SK. Microbiota modulate behavioral […]
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Also tagged biochemistry, Connectomics, CRISPR, CRISPR-CAS, electrophysiology, evolution, funding, gene regulatory network, genetics, Genome editing, genomics, imaging, medicine, Microscopy, neuroscience, retina, RNA-seq, stem cells, super-resolution imaging, systems biology, TALEN, zebrafish
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Neuroscience Kabra M, Robie AA, Rivera-Alba M, Branson S, Branson K. JAABA: interactive machine learning for automatic annotation of animal behavior. Nat Methods. 2013 Jan;10(1):64-7. doi: 10.1038/nmeth.2281. Epub 2012 Dec 2. PubMed PMID: 23202433. Koch KW. The guanylate cyclase signaling system in zebrafish photoreceptors. FEBS Lett. 2013 May 6. doi:pii: S0014-5793(13)00318-9. 10.1016/j.febslet.2013.04.023. [Epub ahead of […]