John Anderson Publications

Journal

Collings, Clayton K. and Anderson, John N., 2017 Links between DNA methylation and nucleosome occupancy in the human genome, Epigenetics & Chromatin  2017  10:18 DOI:10.1186/s13072-017-0125-5

Collings  C.K and Anderson J. N., 2013 Correlations between DNA methylation levels and nucleosome enrichment in the human genome.  Epigenetics & Chromatin  6 (Suppl 1):O9.

Collings, C.K. Waddell, P.J. and Anderson J. N. 2013 Effects of DNA methylation on Nucleosome Stability   Nucleic Acids Research  41:2918-2931

Collings CK, Fernandez AG, Pitschka CG, Hawkins TB, Anderson JN (2010) Oligonucleotide Sequence Motifs as Nucleosome Positioning Signals. PLoS ONE 5(6): e10933. doi:10.1371/journal.pone.0010933 pages1-18

Fernandez, A. G., Anderson, J. N. 2007. Nucleosome positioning determinants. J Mol Biol. 371: 649-668.

Balzarini, J., Camarasa, M. J., Perez-Perez, M. J., San-Felix, A., Velazquez, S., Perno, C. F., De Clercq, E., Anderson, J. N., Karlsson, A. 2001. Exploitation of the low fidelity of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase and the nucleotide composition bias in the HIV-1 genome to alter the drug resistance development of HIV. J Virol. 75: 5772-5777.

Fitzgerald, D. J., Anderson, J. N. 1999. Selective nucleosome disruption by drugs that bind in the minor groove of DNA. J Biol Chem. 274: 27128-27138.

Fitzgerald, D. J., Anderson, J. N. 1999. DNA distortion as a factor in nucleosome positioning. J Mol Biol. 293: 477-491.

Albert, F. G., Eckdahl, T. T., Fitzgerald, D. J., Anderson, J. N. 1999. Heterogeneity in the actions of drugs that bind in the DNA minor groove. Biochemistry. 38: 10135-10146.

Palin, A. H., Critcher, R., Fitzgerald, D. J., Anderson, J. N., Farr, C. J. 1998. Direct cloning and analysis of DNA sequences from a region of the Chinese hamster genome associated with aphidicolin-sensitive fragility. J Cell Sci. 111 ( Pt 12): 1623-1634.

Fitzgerald, D. J., Anderson, J. N. 1998. Unique translational positioning of nucleosomes on synthetic DNAs. Nucleic Acids Res. 26: 2526-2535.

Fitzgerald, D. J., Bronson, E. C., Anderson, J. N. 1996. Compositional similarities between the human immunodeficiency virus and surface antigens of pathogens. AIDS Res Hum Retroviruses. 12: 99-106.

Albert, F. G., Bronson, E. C., Fitzgerald, D. J., Anderson, J. N. 1995. Circular structures in retroviral and cellular genomes. J Biol Chem. 270: 23570-23581.

Wang, Q., Albert, F. G., Fitzgerald, D. J., Calvo, J. M., Anderson, J. N. 1994. Sequence determinants of DNA bending in the ilvlH promoter and regulatory region of Escherichia coli. Nucleic Acids Res. 22: 5753-5760.

Fitzgerald, D. J., Dryden, G. L., Bronson, E. C., Williams, J. S., Anderson, J. N. 1994. Conserved patterns of bending in satellite and nucleosome positioning DNA. J Biol Chem. 269: 21303-21314.

Bronson, E. C., Anderson, J. N. 1994. Nucleotide composition as a driving force in the evolution of retroviruses. J Mol Evol. 38: 506-532.

Butch, E. R., Lau, H. H., Shaw, K. L., Smolarek, T. A., Schmerold, I., Anderson, J. N., Baird, W. M., Yagi, H., Jerina, D. M. 1992. High selectivity of polyclonal antibodies against DNA modified by diastereomeric benzo[c]phenanthrene-3,4-diol-1,2-epoxides. Carcinogenesis. 13: 895-899.

Eberhart, J., Coffing, S. L., Anderson, J. N., Marcus, C., Kalogeris, T. J., Baird, W. M., Park, S. S., Gelboin, H. V. 1992. The time-dependent increase in the binding of benzo[a]pyrene to DNA through (+)-anti-benzo[a]pyrene-7,8-diol-9,10-epoxide in primary rat hepatocyte cultures results from induction of cytochrome P450IA1 by benzo[a]pyrene treatment. Carcinogenesis. 13: 297-301.

VanWye, J. D., Bronson, E. C., Anderson, J. N. 1991. Species-specific patterns of DNA bending and sequence. Nucleic Acids Res. 19: 5253-5261.

Eckdahl, T. T., Anderson, J. N. 1990. Conserved DNA structures in origins of replication. Nucleic Acids Res. 18: 1609-1612.

Eckdahl, T. T., Bennetzen, J. L., Anderson, J. N. 1989. DNA structures associated with autonomously replicating sequences from plants. Plant Molecular Biology. 12: 507-516.

Williams, J. S., Eckdahl, T. T., Anderson, J. N. 1988. Bent DNA functions as a replication enhancer in Saccharomyces cerevisiae. Mol Cell Biol. 8: 2763-2769.

Eckdahl, T. T., Anderson, J. N. 1988. Bent DNA is a conserved structure in an adenovirus control region. Nucleic Acids Res. 16: 2346.

Babin, J. K., Anderson, J. N. 1988. Isolation and analysis of hepatoma nuclear proteins using monoclonal antibodies. Cancer Res. 48: 5495-5502.

Eckdahl, T. T., Anderson, J. N. 1987. Computer modelling of DNA structures involved in chromosome maintenance. Nucleic Acids Res. 15: 8531-8545.

Brown, J. W., Anderson, J. A. 1986. The binding of the chromosomal protein HMG-2a to DNA regions of reduced stabilities. J Biol Chem. 261: 1349-1354.

Anderson, J. N. 1986. Detection, sequence patterns and function of unusual DNA structures. Nucleic Acids Res. 14: 8513-8533.

Sebti, S. M., Moynihan, C. G., Anderson, J. N., Baird, W. M. 1985. Benzo[a]pyrene-DNA adduct formation in target and activator cells in a Wistar rat embryo cell-mediated V79 cell mutation assay. Carcinogenesis. 6: 983-988.

Vanderbilt, J. N., Anderson, J. N. 1985. Monoclonal antibodies as probes for the complexity, phylogeny, and chromatin distribution of high mobility group chromosomal proteins 1 and 2. J Biol Chem. 260: 9336-9345.

Evers, D. C., Anderson, J. N., Morre, D. J. 1984. Flow kinetics of fibronectin secretion by livers of young preweanling rats. Eur J Cell Biol. 35: 81-89.

Vanderbilt, J. N., Anderson, J. N. 1983. Monoclonal antibodies to tissue-specific chromatin proteins. J Biol Chem. 258: 7751-7756.

Folger, K., Anderson, J. N., Hayward, M. A., Shapiro, D. J. 1983. Nuclease sensitivity and DNA methylation in estrogen regulation of Xenopus laevis vitellogenin gene expression. J Biol Chem. 258: 8908-8914.

Anderson, J. N., Vanderbilt, J. N., Lawson, G. M., Tsai, M. J., O'Malley, B. W. 1983. Chromatin structure of the ovalbumin gene family in the chicken oviduct. Biochemistry. 22: 21-30.

Sadek, S. A., Kessler, W. V., Shaw, S. M., Anderson, J. N., Wolf, G. C. 1982. Selenium labeling in nuclear medicine. 2. D ring substituted estrogens. J Med Chem. 25: 1488-1492.

Bloom, K. S., Anderson, J. N. 1982. Hormonal regulation of the conformation of the ovalbumin gene in chick oviduct chromatin. J Biol Chem. 257: 13018-13027.

Vanderbilt, J. N., Bloom, K. S., Anderson, J. N. 1982. Endogenous nuclease. Properties and effects on transcribed genes in chromatin. J Biol Chem. 257: 13009-13017.

Pedersen, K., Bloom, K. S., Anderson, J. N., Glover, D. V., Larkins, B. A. 1980. Analysis of the complexity and frequency of zein genes in the maize genome. Biochemistry. 19: 1644-1650.

Bloom, K. S., Anderson, J. N. 1979. A novel method for the two-dimensional analysis of proteins. Anal Biochem. 98: 410-416.

Bloom, K. S., Anderson, J. N. 1979. Conformation of ovalbumin and globin genes in chromatin during differential gene expression. J Biol Chem. 254: 10532-10539.

Germain, B. J., Campbell, P. S., Anderson, J. N. 1978. Role of the serum estrogen-binding protein in the control of tissue estradiol levels during postnatal development of the female rat. Endocrinology. 103: 1401-1410.

Clark, J. H., Anderson, J. N., Hsueh, A. J., Eriksson, H., Hardin, J. W., Peck, E. J., Jr. 1978. Methods for assessing the binding of steroid hormones in nuclei and chromatin. Methods Cell Biol. 17: 335-348.

Bloom, K. S., Anderson, J. N. 1978. Fractionation and characterization of chromosomal proteins by the hydroxyapatite dissociation method. J Biol Chem. 253: 4446-4450.

Bloom, K. S., Anderson, J. N. 1978. Fractionation of hen oviduct chromatin into transcriptionally active and inactive regions after selective micrococcal nuclease digestion. Cell. 15: 141-150.

Dryden, G. L., Anderson, J. N. 1977. Ovarian hormone: lack of effect on reproductive structures of female Asian musk shrews. Science. 197: 782-784.

Clark, J. H., Peck, E. J., Jr., Anderson, J. N. 1976. Estrogen-receptor binding: relationship to estrogen-induced responses. J Toxicol Environ Health. 1: 561-586.

Anderson, J. N., Schimke, R. T. 1976. Partial purification of the ovalbumin gene. Cell. 7: 331-338.

Clark, J. H., Anderson, J. N., Peck, E. J., Jr. 1975. (3H) estradiol exchange assay for the determination of nuclear receptor-estrogen complex. Methods Enzymol. 36: 283-286.

Anderson, J. N., Peck, E. J., Jr., Clark, J. H. 1975. Estrogen-induced uterine responses and growth: relationship to receptor estrogen binding by uterine nuclei. Endocrinology. 96: 160-167.

Clark, J. H., Peck, E. J., Jr., Anderson, J. N. 1974. Oestrogen receptors and antagonism of steroid hormone action. Nature. 251: 446-448.

Anderson, J. N., Peck, E. J., Jr., Clark, J. H. 1974. Nuclear receptor-estrogen complex: in vivo and in vitro binding of estradiol and estriol as influenced by serum albumin. J Steroid Biochem. 5: 103-107.

Anderson, J. N., Peck, E. J., Jr., Clark, J. H. 1974. Nuclear receptor estradiol complex: a requirement for uterotrophic responses. Endocrinology. 95: 174-178.

Clark, J. H., Anderson, J. N., Peck, E. J., Jr. 1973. Nuclear receptor-estrogen complexes of rat uteri: concentration-time-response parameters. Adv Exp Med Biol. 36: 15-59.

Clark, J. H., Anderson, J. N., Peck, E. J., Jr. 1973. Estrogen receptor-anti-estrogen complex: atypical binding by uterine nuclei and effects on uterine growth. Steroids. 22: 707-718.

Anderson, J. N., Peck, E. J., Jr., Clark, J. H. 1973. Nuclear receptor-estrogen complex: relationship between concentration and early uterotrophic responses. Endocrinology. 92: 1488-1495.

Anderson, J. N., Peck, E. J., Jr., Clark, J. H. 1973. Nuclear receptor estrogen complex: accumulation, retention and localization in the hypothalamus and pituitary. Endocrinology. 93: 711-717.

Clark, J. H., Anderson, J., Peck, E. J., Jr. 1972. Receptor-estrogen complex in the nuclear fraction of rat uterine cells during the estrous cycle. Science. 176: 528-530.

Anderson, J. N., Clark, J. H., Peck, E. J., Jr. 1972. The relationship between nuclear receptor-estrogen binding and uterotrophic responses. Biochem Biophys Res Commun. 48: 1460-1468.

Anderson, J., Clark, J. H., Peck, E. J., Jr. 1972. Oestrogen and nuclear binding sites. Determination of specific sites by ( 3 H)oestradiol exchange. Biochem J. 126: 561-567.

Book Section

Anderson, J. N. 1984. The effect of steroid hormones on gene transcription. 38: 159-211.

Anderson, J. N. 1983. Effects of steriod hormones on chick oviduct chromatin. 17-59.

Clark, J. H., Anderson, J. N., E. J. Peck, Jr. 1975. Tritiated extradiol exchange assay for quantifying nuclear receptor estrogen complex. 36: 283-291.

 



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