William Cramer Publications

Journal

Bhaduri, S. et al. 2017. Pathways of Trans-membrane Electron Transfer in Cytochrome bc Complexes: Dielectric Heterogeneity and Inter-Heme Coulomb Interactions. J. Phys. Chem, B, 121, 975-983.

Brand JJ, Kerfeld CA, Cramer WA, Govindjee. Photosynth Res. 2017 Feb 2. doi: 10.1007/s11120-016-0335-x. [Epub ahead of print] PMID: 28155215

M. Sarewicz,L. Bujnowicz, S Bhaduri, S. Singh, W. A. Cramer, A. Osyczka (2017) A metastable radical rate, non-reactive with oxygen, is inherent to catalysis by respiratory and photosynthetic cytochrome bc1/b6f complexes. Proc. Natl. Acad. Sci, U. S. A.

Cramer, W. A. and S. Saif Hasan (2016) The Cytochrome b6f Lipoprotein Complex; pp. 177-207 in “Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling,” Eds. Govindjee and T. Sharkey (Springer, Dordrecht), volume 41 in the Series "Adv. in Photosynthesis and Respiration,” eds. Govindjee and T. Sharkey" (Springer, Dordrecht) ISSN 1572-0233; ISBN 978-94-017-7479-6; DOI 10.1007/978-94-017-7481-9.


Chauvet, A., R. Agarwal, W. A. Cramer, and M. Chergui (2016). Photo-induced oxidation of the Uniquely Liganded Heme f in the Energy Transducing Cytochrome b6f Complex of Oxygenic Photosynthesis. Phys Chem Chem Phys. (2016) 18:12983-91. doi: 10.1039/c6cp01592a.

Singh, S. K. et al. 2016. Redox-Dependent Trans-Membrane Signaling in Photosynthetic State Transitions: Interaction of a Serine-Threonine Kinase with the Cytochrome b6f Complex. J. Biol. Chem., 291: 21740-21750; doi: 10.1074/jbc.M116.732545

Celia, H. et al. (2016) Structural Insight into the role of the Ton Complex in Energy Transduction. Nature, doi: 10.1038/nature19757 PMID: 27654919.

Zakharov, S. D. et al. (2016) The Colicin E1 TolC-binding conformer: Pillar or Pore Function in Colicin Import. Biochemistry, 55, 5084-5094.

Cramer, W. A. and T. Kallas, eds. (2016) Book: “Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling; pp. 754; vol. 41 in Series "Advances in Photosynthesis and Respiration;" Series Eds. Govindjee, T. Sharkey (Springer, Dordrecht); ISSN 1572-0233;ISBN 978-94-017-7479-6;DOI 10.1007/978-94-017-7481-9.

Baniulis, D., S. S. Hasan, I. Miliute, and W. A. Cramer (2016) Mechanisms of Superoxide Generation and Signaling in Cytochrome bc Complexes; pp. 397-417, in “Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling,” eds, W. A. Cramer and T. Kallas; vol. 41 in Series "Advances in Photosynthesis and Respiration; series Eds. Govindjee, T. Sharkey" (Springer, Dordrecht). ISSN 1572-0233; ISBN 978-94-017-7479-6; DOI 10.1007/978-94-017-7481-9.

Chauvet AA, Agarwal R, Cramer WA, Chergui M. Rev Sci Instrum. 2015 Oct;86(10):106101. doi: 10.1063/1.4932183. PMID:26520998

Agarwal R, S. S. Hasan, L. M. Jones LM, J. T. Stofleth, C. M. Ryan J. P. Whitelegge, D. M. Kehoe, & W. A. Cramer (2015). Role of Domain Swapping in the Hetero-Oligomeric Cytochrome b6f Lipoprotein Complex. Biochemistry 2015 May 26;54(20):3151-63. doi: 10.1021/acs.biochem.5b00279. Epub 2015 May 12.

Agarwal, R., S. D. Zakharov, S.  Saif Hasan, C. M. Ryan, J. P. Whitelegge, and W. A. Cramer. 2014.  Structure-Function of the Cyanobacterial Outer Membrane Protein Slr1270: Homolog of E. coli Drug Export/Colicin Import Protein, TolC. FEBS Lett., 588, 3793-3801. PMID: 25218435

Hasan, S. Saif. E. A. Proctor, E. Yamashita, N. V. Dokholyan and W. A. Cramer. 2014. Traffic Within the Cytochrome b6f Lipoprotein Complex: Gating of the Quinone Portal, Biophysical J., 107, 1620-1628. PMID: 25296314  PMCID: PMC4190601

Hasan, S. S. and W. A. Cramer. 2014. Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome b6f Complex, Structure, 22, 1008-1015.

Hasan, S. S., S. D. Zakharov, A. Chauvet, V. Stadnytskyi, S. Savikhin, and W. A. Cramer. 2014. A Map of Dielectric Heterogeneity in a Membrane Protein: the Hetero-Oligomeric Cytochrome b6f Complex, J. Phys. Chem. B. 118: 6614-6625.  PMID: 24867491

Baniulis, D., S. S. Hasan, J. T. Stofleth, and W. A. Cramer. 2013. Mechanism of Enhanced Superoxide Production in the Cytochrome b6f Complex of Oxygenic Photosynthesis, Biochemistry, 52:8975–8983. PMID: 24298890; [PMCID - in process].

Hasan, S. S., E. Yamashita, and W. A. Cramer. 2013. Trans-Membrane Signaling and Assembly of the Cytochrome b6f-Lipidic Charge Transfer Complex. Biochim Biophys Acta (Bioenergetics) Review.
1827:1295-1308. PMID: 23507619

Hasan SS, Baniulis D, Yamashita E, Zhalnina MV, Zakharov SD, Stofleth JT, Cramer WA. Curr Protoc Protein Sci. 2013 Nov 5;74:Unit 29.7.. doi: 10.1002/0471140864.ps2907s74. PMID:24510648

Hasan. S. S., J. T. Stofleth, E. Yamashita, and W. A. Cramer. 2013. Lipid-Induced Conformational Changes within the Cytochrome b6f Complex of Oxygenic Photosynthesis. Biochemistry, 52: 2649-2654. PMID:23514009

Hasan, S. S.,  E. Yamashita, D. Baniulis, and W. A. Cramer.  2013.  Quinone-Dependent Proton Transfer Pathways in the Photosynthetic Cytochrome b6f Complex. Proc. Natl. Acad. Sci., U. S. A., 110: 4297-4302.  PMID: 23440205 PMCID: PMC3600468

Zakharov, S. D., O. Sharma, M. Zhalnina, E. Yamashita, and W. A. Cramer. 2012. Pathways of Colicin Import: Utilization of BtuB, OmpF Porin, and the TolC Drug Export Protein, Biochemical Soc. Transactions, 40, 1463-1468. PMID:23176499

Hasan, S. S. and W. A. Cramer.  2012.  On the Rate Limitations of Electron Transfer in the Photosynthetic Cytochrome b6f Complex, Physical Chemistry Chemical Physics, 14:13853-13860. PMID: 22890107  PMCID: PMC3505453

Hasan, S. S. and W. A. Cramer.  2012. Lipid Functions in Cytochrome bc Complexes: an Odd Evolutionary Transition in a Membrane Protein Structure, Structure and Dynamics of the Thylakoid Membrane Royal Society Philosophical Transactions B (P. Horton, ed.), 367, 3406-3411. PMID:23148267  PMCID: PMC3497066

Jakes, K., Cramer, W. A. 2012. Border Crossings - Colicins and Transporters. Annual Reviews of Genetics. 46:209-231. PMID: 22934645

Cramer, W. A., S. D. Zakharov, E. Yamashita, S. Saif Hasan, H. Zhang, D. Baniulis, M. V. Zhalnina, G. M. Soriano, J. C. Rochet, C. Ryan, and J. Whitelegge. 2011. Membrane Proteins in Four Acts: Function Precedes Structure Determination. For Methods: Membrane Protein Technologies for Structural Biology (ed., R. Stevens), 55, 415-420. Elsevier Press, San Diego. PMID:22079407 PMCID: PMC328554

Nowaczyk, M. M., Wulfhorst, H., Ryan, C. M., Souda, P., Zhang, H., Cramer, W. A., Whitelegge, J. P. 2011. NdhP and NdhQ. Two novel small subunits of the cyanobacterial NDH-1 complex. Biochemistry. 50: 1121-1124. PMID:21244052 PMCID: PMC3040284

Cramer, W. A., Hasan, S. S., Yamashita, E. 2011. The Q Cycle of Cytochrome bc Complexes: a Structure Perspective (a review). Biochim. Biophys. Acta-Bioenergetics. 1807: 788-802 . PMID: 21352799 PMCID: PMC310171

Hasan, S. S., Yamashita, E., Ryan, C. M., Whitelegge, J. P., Cramer, W. A. 2011. Conservation of Lipid Sites in the Cytochrome bc Complexes. J. Mol. Biol. 414: 145-162. PMID: 21978667 PMCID: PMC3215850.

Ryan, C.M., Souda, P., Bassilian, S., Ujwal, R., Zhang, J., Abramson, J., Ping, P., Durazo, A., Bowie, J.U., Hasan, S.S., Baniulis, D., Cramer, W.A., Kym F. Faull, K.F., and J.P. Whitelegge. 2010. Post-translational Modifications of Integral Membrane Proteins Resolved by Top-down Fourier Transform Mass Spectrometry with Collisionally Activated Dissociation. Mol. Cell. Proteomics. 9: 791-803. PMID: 20093275 PMCID: PMC2871414

Spector, J., S. D. Zakharov, Y. Lill, O. Sharma, W. A. Cramer, and K. Ritchie. 2010. Mobility of the BtuB and OmpF Escherichia Coli Outer Membrane: Implications for dynamic formation of a Translocon Complex. Biophys. J. 99: 3880-3886. PMID: 21156129 PMCID:PMC3000481

Baniulis, D., E. Yamashita, J.P. Whitelegge, A. Zatsman, M.P. Hendrich, and W.A. Cramer. 2009. Structure-function and stability of the cyanobacterial cytochrome b6f complex from Nostoc sp. PCC 7120. J. Biol. Chem. 284, 9861-9869. PMID: 19189962 PMCID: PMC2665108

Sharma, O., K. A. Datsenko, S. C. Ess, M. V. Zhalnina, B. L. Wanner, and W. A. Cramer. 2009. Genome-wide screens: novel mechanisms in colicin import and cytotoxicity. Molecular Microbiology. 73: 571-585. PMID:19650773 PMCID: PMC3100173

Twigg, A. I., Baniulis, W. A., Cramer, W. A., Hendrich, M. P. 2009. EPR Detection of an O2 Surrogate Bound to Heme cn of the Cytochrome b6f Complex. J. Amer. Chem Soc. 131: 12536-12537. PMID: 19681932 PMCID: PMC2806809

Yan, J., N. Dashdorj, D. Baniulis, E. Yamashita, S. Savikhin and W. A. Cramer. 2008. On the Structural Role of the Aromatic Residue Environment of the Chlorophyll a in the Cytochrome b6f Complex. Biochemistry. 47: 3654-3661. PMID: 18302324

Yamashita, E., Zhalnina, M. V., Zakharov, S. D., Sharma, O., Cramer, W. A. 2008. Crystal structures of the OmpF porin: function in a colicin translocon. Embo J. 27: 2171-2180. PMID: 18636093 PMCID: PMC2516885

Baniulis, D., E. Yamashita, H. Zhang, S. S. Hasan, and W. A. Cramer. 2008. Structure-Function of the Cytochrome b6f Complex. Photochemistry and Photobiology. 84: 1349-1358. PMID: 19067956

Zakharov, S. D., O. Sharma, O., M. Zhalnina, and W. A. Cramer. 2008. Primary Events in the Colicin Translocon: FRET Analysis of Colicin Unfolding Initiated by Binding to BtuB and OmpF. Biochemistry. 47: 12802-12809. PMID: 18986168

Dashdorj, N., Yamashita, E., Schaibley, J., Cramer, W. A., Savikhin, S. 2007. Ultrafast Optical Pump-Probe Studies of the Cytochrome b6f Complex in Solution and Crystalline States. J Phys Chem B. 111: 14405-14410. PMID: 18047317

Sharma, O., Cramer, W. A. 2007. Minimum length requirement of the flexible N-terminal translocation subdomain of colicin E3. J Bacteriol. 189: 363-368. PMID: 17085563 PMCID: PMC1797411

Sharma, O., Yamashita, E., Zhalnina, M. V., Zakharov, S. D., Datsenko, K. A., Wanner, B. L., Cramer, W. A. 2007. Structure of the complex of the colicin E2 R-domain and its BtuB receptor. The outer membrane colicin translocon. J Biol Chem. 282: 23163-23170. PMID: 17548346

Yamashita, E., Zhang, H., Cramer, W. A. 2007. Structure of the cytochrome b6f complex: quinone analogue inhibitors as ligands of heme cn. J Mol Biol. 370: 39-52. PMID: 17498743 PMCID: PMC1993820

Zakharov, S. D., Hulleman, J. D., Dutseva, E. A., Antonenko, Y. N., Rochet, J. C., Cramer, W. A. 2007. Helical alpha α-Synuclein Forms Highly Conductive Ion Channels. Biochemistry. 46: 14369-14379. PMID: 18031063

Adams, K. L., Tsoi, S., Yan, J., Durbin, S. M., Ramdas, A. K., Cramer, W. A., Sturhahn, W., Alp, E. E., Schulz, C. 2006. Fe vibrational spectroscopy of myoglobin and cytochrome f. J. Phys. Chem. B, 110: 530-536. PMID: 16471565

Cherezov, V., Yamashita, E., Liu, W., Zhalnina, M., Cramer, W. A., Caffrey, M. 2006. In meso structure of the cobalamin transporter, BtuB, at 1.95 A resolution. J Mol Biol. 364: 716-734. PMID: 17028020 PMID: PMC1808586

Cramer, W. A., Zhang, H. 2006. Consequences of the structure of the cytochrome b6f complex for its charge transfer pathways. Biochim Biophys Acta. 1757: 339-345. PMID: 16787635

Cramer, W. A., Zhang, H., Yan, J., Kurisu, G., Smith, J. L. 2006. Transmembrane traffic in the cytochrome b(6)f complex. Annu Rev Biochem. 75: 769-790. PMID: 16756511

Sobko, A. A., Kotova, E. A., Antonenko, Y. N., Zakharov, S. D., Cramer, W. A. 2006. Lipid dependence of the channel properties of a colicin E1-lipid toroidal pore. J Biol Chem. 281: 14408-14416. PMID: 16556601

Sobko, A. A., Kotova, E. A., Zakharov, S. D., Cramer, W. A., Antonenko, Y. N. 2006. Lipid-mediated inactivation of colicin e1 channels by calcium ions. Biochemistry (Mosc). 71: 99-103. PMID: 16457626

Whitelegge, J. P., Laganowsky, A., Nishio, J., Souda, P., Zhang, H., Cramer, W. A. 2006. Sequencing covalent modifications of membrane proteins. J Exp. Bot. 57: 1515-1522. PMID: 16574746

Yan, J., Kurisu, G., Cramer, W. A. 2006. Intraprotein transfer of the quinone analogue inhibitor 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone in the cytochrome b6f complex. Proc Natl Acad Sci U S A. 103: 69-74. PMID: 16371475 PMCID: PMC1324977

Zakharov, S. D., Zhalnina, M. V., Sharma, O., Cramer, W. A. 2006. The colicin E3 outer membrane translocon: immunity protein release allows interaction of the cytotoxic domain with OmpF porin. Biochemistry. 45: 10199-10207. PMID: 16922495

Zatsman, A. I., Zhang, H., Gunderson, W. A., Cramer, W. A., and M. P. Hendrich. 2006. Heme-heme interactions in the cytochrome b6f complex: EPR spectroscopy and correlation with structure. J. Am. Chem. Soc. 128: 14246-14247. PMID: 17076484 PMCID: PMC2812023

Kim, H., N. Dashdorj, H. Zhang,J. Yan,W. A. Cramer, and S. Savikhin. 2005. An Anomalous Distance Dependence of Intra-Protein Chlorophyll-Carotenoid Triplet Energy Transfer. Biophys. J. Letters, 89: L28-L30. PMID: 16055550 (PMCID: PMC 1366788)

Kim, H., Dashdorj, N., Zhang, H., Yan, J., Cramer, W. A., Savikhin, S. 2005. An anomalous distance dependence of intraprotein chlorophyll-carotenoid triplet energy transfer. Biophys J. 89: L28-30.

Cramer, W. A., Yan, J., Zhang, H., Kurisu, G., and J. L. Smith. 2005. Structure of the cytochrome b6f complex: new prosthetic groups, Q-space, and the hors doeuvres hypothesis for assembly of the complex. Photosynth Res. 85: 133-143. PMID: 15977064

Cramer, W. A., Zhang, H., Yan, J., and G. Kurisu. 2005. Binding sites of lipophilic quinone and quinone analogue inhibitors in the cytochrome b6f complex of oxygenic photosynthesis. Biochem Soc Trans. 33: 921-923. PMID: 16246011

Dashdorj, N., Zhang, H., Kim, H., Yan, J., Cramer, W. A., and S. Savikhin. 2005. The single chlorophyll a molecule in the cytochrome b6f complex: unusual optical properties protect the complex against singlet oxygen. Biophys J. 88: 4178-4187. PMCID: PMC1305648

Kurisu, G., S. D. Zakharov, M. V. Zhalnina, and W. A. Cramer. 2005. Molecular mechanism of protein import through receptor complexes: implication of the complex structure of outer membrane receptor and colicin E3. Tanpakushitsu Kakusan Koso. 50: 356-361. PMID: 15828282

Zhang, H., and W. A. Cramer. 2005. Problems in obtaining diffraction-quality crystals of hetero-oligomeric integral membrane proteins. J Struct Funct Genomics. 6: 219-223. PMID: 16211522

Cramer, W., Bondeau, A., Schaphoff, S., Lucht, W., Smith, B., Sitch, S. 2004. Tropical forests and the global carbon cycle: impacts of atmospheric carbon dioxide, climate change and rate of deforestation. Philos Trans R Soc Lond B Biol Sci. 359: 331-343.

Kurisu, G., Zhang, H., Smith, J. L., Cramer, W. A. 2004. Structure and function of the cytochrome b6f complex of oxygenic photosynthesis. Tanpakushitsu Kakusan Koso. 49: 1265-1273.

Zhang, H., Cramer, W. A. 2004. Purification and crystallization of the cytochrome b6f complex in oxygenic photosynthesis. Methods Mol Biol. 274: 67-78.

Cramer, W. A. 2004. Ironies in photosynthetic electron transport: a personal perspective. Photosynth Res. 80: 293-305. PMID: 16328827

Cramer, W. A., Zhang, H., Yan, J., Kurisu, G., and J. L. Smith. 2004. Evolution of photosynthesis: time-independent structure of the cytochrome b6f complex. Biochemistry. 43: 5921-5929. PMID: 15147175

Misquitta, L. V., Misquitta, Y., Cherezov, V., Slattery, O., Mohan, J. M., Hart, D., Zhalnina, M., Cramer, W. A., and M. Caffrey. 2004. Membrane protein crystallization in lipidic mesophases with tailored bilayers. Structure. 12: 2113-2124. PMID: 15576026

Smith, J. L., Zhang, H., Yan, J., Kurisu, G., and W. A. Cramer. 2004. Cytochrome bc complexes: a common core of structure and function surrounded by diversity in the outlying provinces. Curr Opin Struct Biol. 14: 432-439. PMID: 15313237

Sobko, A. A., Kotova, E. A., Antonenko, Y. N., Zakharov, S. D., and W. A. Cramer. 2004. Effect of lipids with different spontaneous curvature on the channel activity of colicin E1: evidence in favor of a toroidal pore. FEBS Lett. 576: 205-210. PMID: 15474038

Sobko, A. A., Vigasina, M. A., Rokitskaya, T. I., Kotova, E. A., Zakharov, S. D., Cramer, W. A., and Y. N. Antonenko. 2004. Chemical and photochemical modification of colicin E1 and gramicidin A in bilayer lipid membranes. J Membr Biol. 199: 51-62. PMID: 15366423

Yan, J., and W. A. Cramer. 2004. Molecular control of a bimodal distribution of quinone-analogue inhibitor binding sites in the cytochrome b6f complex. J Mol Biol. 344: 481-493. PMID: 15522300

Zakharov, S. D., and W. A. Cramer. 2004. On the mechanism and pathway of colicin import across the E. Coli outer membrane. Front Biosci. 9: 1311-1317. PMID: 14977546

Zakharov, S. D., Eroukova, V. Y., Rokitskaya, T. I., Zhalnina, M. V., Sharma, O., Loll, P. J., Zgurskaya, H. I., Antonenko, Y. N., and W. A. Cramer. 2004. Colicin occlusion of OmpF and TolC channels: outer membrane translocons for colicin import. Biophys J. 87: 3901-3911. PMID: 15465872 (PMCID: PMC 1304901)

Zakharov, S. D., Kotova, E. A., Antonenko, Y. N., and W. A. Cramer. 2004. On the role of lipid in colicin pore formation. Biochim Biophys Acta. 1666: 239-249. PMID: 15519318

Zhang, H., Primak, A., Cape, J., Bowman, M. K., Kramer, D. M., and W. A. Cramer. 2004. Characterization of the high-spin heme x in the cytochrome b6f complex of oxygenic photosynthesis. Biochemistry. 43: 16329-16336. PMID: 15610027

Kurisu, G., Zakharov, S. D., Zhalnina, M. V., Bano, S., Eroukova, V. Y., Rokitskaya, T. I., Antonenko, Y. N., Wiener, M. C., and Cramer, W. A. 2003. The structure of BtuB with bound colicin E3 R-domain implies a translocon. Nat. Struct. Biol. 10: 948-954. PMID: 14528295

Kurisu, G., Zhang, H., Smith, J. L., Cramer, W. A. 2003. Structure of the cytochrome b6f complex of oxygenic photosynthesis: tuning the cavity. Science. 302: 1009-1014. PMID: 14526088

Yan, J., and W. A. Cramer. 2003. Functional insensitivity of the cytochrome b6f complex to structure changes in the hinge region of the Rieske iron-sulfur protein. J Biol Chem. 278: 20925-20933. PMID: 12672829

Zhang, H., Kurisu, G., Smith, J. L., and W. A. Cramer. 2003. A defined protein-detergent-lipid complex for crystallization of integral membrane proteins: The cytochrome b6f complex of oxygenic photosynthesis. Proc Natl Acad Sci U S A. 100: 5160-5163.  PMID: 12702760 (PMCID: PMC154315)

Soriano, G. M., Guo, L. W., De Vitry, C., Kallas, T., and W. A. Cramer. 2002. Electron transfer from the Rieske iron-sulfur protein (ISP) to cytochrome f in vitro. Is a guided trajectory of the ISP necessary for competent docking?. J Biol Chem. 277: 41865-41871. PMID: 12207018

Whitelegge, J. P., Zhang, H., Aguilera, R., Taylor, R. M., and W. A.  Cramer. 2002. Full subunit coverage liquid chromatography electrospray ionization mass spectrometry (LCMS+) of an oligomeric membrane protein: cytochrome b(6)f complex from spinach and the cyanobacterium Mastigocladus laminosus. Mol Cell Proteomics. 1: 816-827. PMID: 12438564

Zakharov, S. D., and W. A. Cramer. 2002. Insertion intermediates of pore-forming colicins in membrane two-dimensional space. Biochimie. 84: 465-475. PMID: 12423790

Zakharov, S. D., and W. A. Cramer. 2002. Colicin crystal structures: pathways and mechanisms for colicin insertion into membranes. Biochim Biophys Acta. 1565: 333-346. PMID: 12409205

Zakharov, S. D., Rokitskaya, T. I., Shapovalov, V. L., Antonenko, Y. N., and W. A. Cramer. 2002. Tuning the membrane surface potential for efficient toxin import. Proc Natl Acad Sci U S A. 99:8654-8659. PMID: 12060711 (PMCID: PMC124348).

Soriano, G. M., Cramer, W. A. 2001. Deuterium kinetic isotope effects in the p-side pathway for quinol oxidation by the cytochrome b(6)f complex. Biochemistry. 40: 15109-15116. PMID: 11735393

Zhang, H., Whitelegge, J. P., Cramer, W. A. 2001. Ferredoxin:NADP+ oxidoreductase is a subunit of the chloroplast cytochrome b6f complex. J Biol Chem. 276: 38159-38165.  PMID: 11483610

Vallon, O., G.-S. Tae, W. A. Cramer, D. Simpson, G. Hoyer-Hansen, and L. Bogorad.  1989.  Visualization of antibody binding to the photosynthetic membrane: The transmembrane orientation of cytochrome b-559.  Biochim. Biophys. Acta, 975:132-141. PMID: 2500150

Cramer, W. A., S. Theg, and W. R. Widger.  1986.  On the structure and function of cytochrome b-559.  Photosyn. Res., 10:393-403. PMID: 24435387

Book

Cramer, W. A. and T. Kallas (eds.) 2016. Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling. Eds., Govindjee and T. Sharkey. Vol. 41 in the Series "Advances in Photosynthesis and Respiration",  Springer-Verlag, Dordrecht.ISSN: 1572-0233; ISBN 978-94-017-7479-6; DOI: 10.1007/978-94-017-7481-9

Cramer, W. A., Savikhin, S., Yan, J., Yamashita, E. 2010. The Enigmatic Chlorophyll a Molecule in the Cytochrome b6f complex.. The Chloroplast (C. Rebeiz, ed.) Springer-Verlag. Chapter 6.

Cramer, W. A., and G. M. Soriano. 2002. Thermodynamics of Membrane Energy Transduction, in Energy Transduction in Membranes (W. A. Cramer, ed.), Educational Resources, Biophysical Society (http://www.biophysics.org/education/mechanisms.htm), 58 pp.

Cramer, W. A., and D. B. Knaff. 1991. Energy Transduction in Biological Membranes, Springer Study Edition, [paperback, ISBN: 0-387-97533-0]; solutions to homework problems included, 579 pp.

Cramer, W. A., and D. B. Knaff. 1990. Energy Transduction in Biological Membranes, Springer Study Edition, [hard cover and paperback, ISBN: 0-387-97533-0]; solutions to homework problems included, 579 pp.

Govindjee, J. Barber, W. A. Cramer, J. H. C. Goedheer, J. Lavorel, R. Marcelle, and B. Zilinskas (eds.) 1987. Excitation energy and Electron Transfer in Photosynthesis. Martinus Nijhoff, Dordrecht, 518 pp.

Book Section

Cramer, W. A., and T. Kallas (eds) (2015) Cytochrome Complexes:  Evolution, Structures, Energy Transduction, and Signaling (Book), Springer-Verlag.

Cramer, W. A. and S. K. Singh (2015) A Structure Perspective on Organelle Bioenergetics. Encyclopedia of Cell Biology, R. Bradshaw & P. Stahl, eds., Elsevier, Oxford, UK.

Baniulis, D., S. S. Hasan, I. Miliute, and W. A. Cramer (2015) Mechanisms of Superoxide Generation and Signaling in Cytochrome bc Complexes. in Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling, Springer-Verlag. eds. W. A. Cramer and T. Kallas.

Baniulis, D., S. Saif Hasan, I. Miliute, and  W. .A. Cramer. 2014. "Mechanisms of Superoxide Generation and Signaling in Cytochrome bc Complexes" in  Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling (eds. W. A. Cramer and T. Kallas), Vol. 38 of the series "Advances in Photosynthesis and Respiration.”  Springer, Dordrecht, in press.

Hasan, S. S., Baniulis, D., E. Yamashita, M. V. Zhalnina, S. D. Zakharov,  J. T. Stofleth, and W. A. Cramer. 2013. Methods for Studying Interactions of Detergents and Lipids with α-Helical and β-Barrel Integral Membrane Proteins. Current Protocols in Protein Science, 74:29.7.1-297.30.

Sharma, O., S. D. Zakharov, M. V. Zhalnina, E. Yamashita, and W. A. Cramer. 2013. Colicins, Handbook of Biologically Active Peptides (A. Kastin, ed; section ed., R. E. W. Hancock), Academic Press, Chap. 17: 93-100.

Cramer, W. A., Yamashita, E. Hasan, S. S. 2013. Structure-Function of the Cytochrome b6f Complex of Oxygenic Photosynthesis. in Encyclopedia of Biological Chemistry-2nd Edition, Vol. 4, (eds. M. D. Lane and W. J. Lennarz), Academic Press, Waltham, MA, pp. 167-171.

Hasan, S. S., et al.  2013.  Methods for Studying Interactions of Detergents and Lipids with a α-Helical and β-Barrel Integral Membrane Proteins, Curr. Prot. Sci. Sup. 74:29.7.1-29.7.30. doi: 10.1002/0471140864.ps2907s74. PMID: 24510648 [PubMed – in process].

Cramer, W. A., E. Yamashita, S. S. Hasan and D. Baniulis. 2012. Cytochrome b6f, Encyclopedia of Biophysics (Vol 1), (Roberts, G., Ed), Springer, Berlin Heidelberg, pp. 417- 422.

Souda, P., C. M. Ryan, W. A. Cramer, and J. Whitelegge. 2011. Profiling of Integral Membrane Proteins and Their Post-translational Modifications Using High-resolution Mass Spectrometry, Methods of Membrane Protein Expression and Stabilization (R. Stevens, ed.), For Methods: Membrane Protein Technologies for Structural Biology (ed., R. Stevens), Elsevier Press, San Diego, 55, 330-336.

Cramer, W. A., Yamashita, E, Baniulis, D., Hasan, S. S. 2011. The Cytochrome b6f Complex of Oxygenic Photosynthesis; in Handbook of Metalloproteins, (ed A. Messerschmidt), John Wiley & Sons: Chichester. 4: 16-28. (ISBN: 978-0-470-71199-6).

Baniulis, D., Ahang, H., Yamashita, E., Zakharova, T., Hasan, S.S., Cramer W. A. 2011. Purification and Crystallization of the Cyanobacterial Cytochrome b6f Complex; in Methods in Molecular Biology, Photosynthesis Research Protocols.  (Ed., R Carpenter) Humana Press, Inc. Totowa, N. J., 684: 65-77.

Cramer. W. A., Savikhin, S. Yan, J., and Yamashita, E. 2010. The Enigmatic Chlorophyll a Molecule in the Cytochrome b6f Complex, Chapt. 6, in The Chloroplast (C. Rebeiz, ed.), Springer-Verlag

Cramer, W. A, D. Baniulis, E. Yamashita, H. Zhang, A.I. Zatsman, M.P. Hendrich. 2008. Structure, spectroscopy, and function of the cytochrome b6f complex: heme cn and n-side electron and proton transfer reactions; in Photosynthetic Protein Complexes. A Structural Approach (P. Fromme, ed.). Wiley-VCH, Weinheim. 155-179.

Cramer, W. A., Zhang, H., Yan, J., Kurisu, G., Yamashita, E., Dashdorj, N., Kim, H., Savikhin, S. 2007. Structure-function of the cytochrome b6f complex: a design that has worked for three billion years. In G. Renger (ed.), Primary Processes of Photosynthesis, Royal Society of London, London, UK . 2: 419-448.

Sharma, O., Zakharov, S. D., Cramer, W. A. 2006. Colicins: Section on Bacterial/Antibiotic Peptides. 115-123.

Shiver, J. W., A. A. Peterson, W. R. Widger, and W. A. Cramer.  1989.  Prediction of bilayer spanning domains of hydrophobic and amphipathic membrane proteins: Application to the cytochrome b and colicin families.  Meth. Enzymol., Vol. 172, Biomembranes, Cellular and Subcellular Transport, (S. Fleischer and B. Fleischer, eds.), chapt. 25, pp. 439-461. PMID: 2747538

Cramer, W. A., F. S. Cohen, A. R. Merrill, A. Nakazawa, K. Shirabe, J. W. Shiver, and S. Xu.  1988.  Mutagenesis of the COOH-terminal domain of colicin E1 affecting the ion selectivity of the channel.  In Transport through Membranes: Carriers, Channels, and Pumps, (A. Pullman, ed.), pp. 77-89, D. Reidel, Dordrecht.

Conference Proceedings

Zakharov, S. D., S. S. Hasan, A. Chauvet, V. Stadnytsky, S. Savikhin, and W. A. Cramer.  2014.  Dielectric Heterogeneity in the Cytochrome b6f Complex. Abstr. 58th Ann. Mtg. Biophysical Soc, San Francisco, CA.

Zakharov, S. D., S. S. Hasan, A. Chauvet, S. Savikhin, & W. A. Cramer, 2013. "Dielectric Heterogeneity in the Cytochrome b6f Complex", International Congress of Photosynthesis.

Hasan, S. S., D. Baniulis, J. T. Stofleth,  E. Yamashita,  E. A. Proctor,  Nikolay V. Dokholyan, & W. A. Cramer. 2013. "Probing the Quinone Portal in the Cytochrome b6f Complex: Gating Function of the Enigmatic Chlorophyll,"  International Congress of Photosynthesis. (abstract).

Agarwal, R., S. D. Zakharov, & W. A. Cramer. 2013. "slr1270 locus of Synechocystis 6803 (E. coli TolC homologue): Cloning, Overexpression, Purification and Biophysical Characterization," International Congress of Photosynthesis, International Congress of Photosynthesis, August, St. Louis, MO

Baniulis, D., J. T. Stofleth, S. S. Hasan, and W. A. Cramer. 2013. Increased Superoxide Production in the Cytochrome b6f complex: A function for the enigmatic chlorophyll-A. 57th Biophysical Society Annual Mtg.  February 2013, Philadelphia, PA. (abstract)

Zakharov, S. D., S. S. Hasan, A. Chauvet, S. Savikhin, and W. A. Cramer. 2013. Electrostatically Constrained Pathway of Intra/Monomer Electron Transfer in the Cytochrome b6f Complex of Oxygenic Photosynthesis. 57th Biophysical Society Annual Mtg.  February 2013, Philadelphia, PA. (abstract)

Hasan, S. S., E. Yamashita, D. Baniulis, and W. A. Cramer. 2013. An Anhydrous Proton Transfer Pathway in the Cytochrome b6f Complex, 57th Biophysical Society Annual Mtg. February 2013, Philadelphia, PA. (abstract)

Baniulis, D., J. T. Stofleth, S. S. Hasan, and W. A. Cramer. 2013. Increased Superoxide Production in the Cytochrome b6f complex: A function for the enigmatic chlorophyll-A. 57th Biophysical Society Annual Mtg.  February 2013, Philadelphia, PA. (abstract)

S. D. Zakharov, K. S. Jakes, S. D. Zakharov, X. S. Wang, and W. A. Cramer (2015) Probing the Trans-Periplasm Import Pathway of the Cytotoxin, Colicin E1; Determination of the TolC Box.  4th Molecular Microbiology Meeting, Set. 16-18, Universität Wien, Vienna, Austria

K. S. Jakes, S. D. Zakharov, X. S. Wang, I. Seleznev, and W. A. Cramer (2015) Probing the Cellular Entry Pathway via TolC of the Cytotoxin, Colicin E1. Abstr. 59th Ann. Mtg. Biophysical Soc.; Biophys. J., 108, 373a.

Agarwal, R.,  S. D. Zakharov, S. S. Hasan, J. P. Whitelegge, and W. A. Cramer, Characterization
of a cyanobacterial outer membrane protein: an E. coli TolC homologue from Synechocystis sp.
PCC 6803, 58th Biophysical Society Meeting, Feb. 15 – 19, 2014, San Francisco, CA, USA.

Zakharov, S. D., S. S. Hasan, A. Chauvet, S. Savikhin, and W. A. Cramer. 2013. Electrostatically Constrained Pathway of Intra/Monomer Electron Transfer in the Cytochrome b6f Complex of Oxygenic Photosynthesis. 57th Biophysical Society Annual Mtg.  February 2013, Philadelphia, PA. (abstract)

Zakharov, S. D., O. Sharma, M. Zhalnina, E. Yamashita and W. A. Cramer. 2012. Pathways of Colicin Import: utilization of BtuB, OmpF Porin, and the TolC Drug Export Protein, Biochemical Society Transactions, 40, 1463 - 1468.

Baniulis, D., J. T. Stofleth, S. S. Hasan, and W. A. Cramer. 2012. Increased Superoxide Production in the Cytochrome b6f complex: A function for the enigmatic chlorophyll-A. 38th Midwest/Southeast Photosynthesis Mtg. November 9, Marshall IN.

Hasan, S. S., E. Yamashita, d. Baniulis, and W. A. Cramer. 2012. An anhydrous Proton Transfer Pathway in the Cytochrome b6f Complex. 38th Midwest/Southeast Photosynthesis Mtg. November 9, Marshal IN.

Hasan, S. S. and W. A. Cramer.  2012. Lipid Functions in Cytochrome bc Complexes: an Odd Evolutionary Transition in a Membrane Protein Structure, Structure and Dynamics of the Thylakoid Membrane Royal Society Philosophical Transactions B, (P. Horton, ed), 367, 3406-3411. PMID:23148267 (in process) PMCID: PMC3497066 (available 12/19/2013)

Hasan, S. S. and W. A. Cramer.  2012.  On the Rate Limitations of Electron Transfer in the Photosynthetic Cytochrome b6f Complex, Physical Chemistry Chemical Physics, 14:13853-13860. PMID: 22890107 (in process) PMCID: PMC3505453 (available 10/28/2013

Hasan, S. S., S. D. Zakharov and W. A. Cramer. 2012. Negative cooperativity in the reduction of excitonically interacting b-hemes of the cytochrome b6f complex. 56th Annual Biophysical Society Meeting. February, 2012, San Diego CA.

Zakharov, S. D., M. Zhalnina, and W. A. Cramer. 2012. Insertion of colicin E1 into the OMP TolC is mediated by the ordered segment of the translocation domain.  56th Annual Biophysical Soc. Mtg. February, 2012, San Diego CA.

Hasan, S. S. and W. A. Cramer. 2012. On the Rate Limitations of Electron Transfer in the Photosynthetic Cytochrome b6f Complex, Phsical Chemistry Chemical Physics, 14:13853 - 13860. PMID 22890107  PMCID: PMC3505453

Bajaj, R., S. D. Zakharov, A. M. Griggs, C. Rochet, and W. A. Cramer. 2011. Voltage-dependent membrane insertion and translocation of a-synuclein: liposome studies. Abstr. 55th Ann. Mtg. Biophysical Soc., March 2011, Baltimore.

Hasan, S. S., S. D. Zakharov, and W. A. Cramer.  2011. Preferred pathway of electron transfer in the dimeric cytochrome b6f complex: selective reduction of one monomer. Abst 55th Ann. Mtg. Biophysical Soc., March 2011, Baltimore.

Hasan, S. S., E. Yamashita, and W. A. Cramer. 2011. Lipid binding sites in membrane proteins: cytochrome bc complexes. Abst 55th Ann. Mtg. Biophysical Soc., March 2011, Baltimore.

Hasan, S. S., S. D. Zakharov, E. Yamashita, H. Böhme*, and W. A. Cramer. 2010. Exciton Interactions between hemes bn and bp in the cytochrome b6f complex. Abstr. 54th Ann. Mtg. Biophysical Soc., February, 2010, San Francisco.

Zakharov, S. D., H. Celia, K. A. Datsenko, M. Santamaria, J. Whitelegge, R. Lloubes, W. A. Cramer. 2010. Components of the E. Coli energy-transducing complexes, ExbB and TolQ, display ion channels. Abstr 54th Ann. Mtg. Biophysical Soc., February, 2010, San Francisco.

Yamashita, E., D. Baniulis, A. I. Zatsman, M. P. Hendrichs, and W. A. Cramer. 2009. Unique structure aspects of the cytochrome b6f complex. Mini-symposium on Electron Transfer and Energy Coupling Reactions in Organelles. Biophys. Soc., 53rd Ann. Mtg., Boston, MA.

Zakharov, S. D., O. Sharma, E. Yamashita, M. V. Zhalnina, K. A. Datsenko, S. Ess, B. L. Wanner, and   W. A. Cramer. 2009. Protein Translocation Across Membranes: Components of Outer Membrane Colicin Translocons. Abstr. 53rd Ann. Mtg., Biophys. Soc, Boston, MA.

Cramer, W. A. and H. Zhang. 2006. Consequences of the Structure of the Cytochrome b6f Complex for its Charge Transfer Mechanisms, Proc. XIV European Bioenergetics Congress-Biochim., Biophys. Acta, 1757, 339-345.

Cramer, W. A., P. N. Furbacher, A. Szczepaniak, and G.-S. Tae.  1990.  The chloroplast b cytochromes: crosslinks, topography, and functions, Plenary Lecture.  Proc. VIII Int. Cong. Photosyn. (M. Baltscheffsky, ed.), vol. III, pp. 221-230, M. Nijhoff, Dordrecht.

Cramer, W. A., J. W. Shiver, P. N. Furbacher, and K. Keegstra.  1990.  Amphipathic b-sheet domains in chloroplast transit peptides.  Proc. VIII Int. Cong. Photosyn. (M. Baltscheffsky, ed.), vol. III, pp. 789- 792, M. Nijhoff, Dordrecht.

Furbacher, P. N., M. E. Girvin, and W. A. Cramer.  1990.  On the site of action of NQNO in the cytochrome b6-f complex and the question of interheme transfer.  Proc. VIII Int. Cong. Photosyn. (M. Baltscheffsky, ed.), vol. III, pp. 271-274, M. Nijhoff, Dordrecht.

 



Purdue University Biological Sciences, 915 W. State Street, West Lafayette, IN 47907

Main Office: (765) 494-4408   Business Office: (765) 494-4764  Contact Us

© 2015 Purdue University | An equal access/equal opportunity university | Copyright Complaints

Trouble with this page? Disability-related accessibility issue? Please contact the College of Science Webmaster.

Maintained by Science IT